Following on from a recent post where we compiled genome assemblies for species in the Drosophila genus, here we bring together the growing list of genome assemblies for microbial symbionts of Drosophila species. Please add information about any other Drosophila symbiont genome sequences assemblies that might be missing from this table in the comments below.
|
Species
|
Strain
|
Host
|
Assembly Producer
|
NCBI
|
|---|---|---|---|---|
| Wolbachia pipientis | wMel | D. melanogaster | TIGR | AE017196 |
| Wolbachia pipientis | wMelPop | D. melanogaster | O’Neill Lab | AQQE00000000 |
| Wolbachia pipientis | wAu | D. simulans | Sinkins Lab | LK055284 |
| Wolbachia pipientis | wSim | D. simulans | Salzberg Lab | AAGC00000000 |
| Wolbachia pipientis | wRi | D. simulans | Andersson Lab | NC_012416 |
| Wolbachia pipientis | wHa | D. simulans | Andersson Lab | NC_021089 |
| Wolbachia pipientis | wNo | D. simulans | Andersson Lab | NC_021084 |
| Wolbachia pipientis | wSuzi | D. suzukii | Anfora Lab | CAOU02000001 |
| Wolbachia pipientis | wAna | D. annanasae | Salzberg Lab | AAGB00000000 |
| Wolbachia pipientis | n.a. | D. willistoni | Salzberg Lab | AAQP00000000 |
| Wolbachia pipientis | wRec | D. recens | Bordenstein Lab | JQAM00000000 |
| Pseudomonas entomophila | L48 | D. melanogaster | Genoscope | NC_008027 |
| Commensalibacter intestini | A911 | D. melanogaster | Lee Lab | AGFR00000000 |
| Acetobacter pomorum | DM001 | D. melanogaster | Lee Lab | AEUP00000000 |
| Gluconobacter morbifer | G707 | D. melanogaster | Lee Lab | AGQV00000000 |
| Providencia sneebia | DSM 19967 | D. melanogaster | Lazzaro Lab | AKKN00000000 |
| Providencia rettgeri | Dmel1 | D. melanogaster | Lazzaro Lab | AJSB00000000 |
| Providencia alcalifaciens | Dmel2 | D. melanogaster | Lazzaro Lab | AKKM00000000 |
| Providencia burhodogranariea | DSM 19968 | D. melanogaster | Lazzaro Lab | AKKL00000000 |
| Lactobacillus brevis | EW | D. melanogaster | Lee Lab | AUTD00000000 |
| Lactobacillus plantarum | WJL | D. melanogaster | Lee Lab | AUTE00000000 |
| Lactobacillus plantarum | DmelCS_001 | D. melanogaster | Douglas Lab | JOJT00000000 |
| Lactobacillus fructivorans | DmelCS_002 | D. melanogaster | Douglas Lab | JOJZ00000000 |
| Lactobacillus brevis | DmelCS_003 | D. melanogaster | Douglas Lab | JOKA00000000 |
| Acetobacter pomorum |
DmelCS_004 | D. melanogaster | Douglas Lab | JOKL00000000 |
| Acetobacter malorum | DmelCS_005 | D. melanogaster | Douglas Lab | JOJU00000000 |
| Acetobacter tropicalis | DmelCS_006 | D. melanogaster | Douglas Lab | JOKM00000000 |
| Lactococcus lactis | Bpl1 | D. melanogaster | Douglas Lab | JRFX00000000 |
| Enterococcus faecalis | Fly1 | D. melanogaster | Broad Institute | ACAR00000000 |
Paul Johnston on Twitter wrote:
@bergmanlab missed an Enterococcus faecalis draft (fly1) from the broad see http://t.co/UxhH6tuA and http://t.co/MV2IdiKM
https://twitter.com/Paul_R_Johnston/status/303136492799262723